Package: DAMOCLES 3.1

DAMOCLES: Dynamic Assembly Model of Colonization, Local Extinction and Speciation

Simulates and computes (maximum) likelihood of a dynamical model of community assembly that takes into account phylogenetic history.

Authors:Rampal S. Etienne & Alex L. Pigot

DAMOCLES_3.1.tar.gz
DAMOCLES_3.1.zip(r-4.7)DAMOCLES_3.1.zip(r-4.6)DAMOCLES_3.1.zip(r-4.5)
DAMOCLES_3.1.tgz(r-4.6-x86_64)DAMOCLES_3.1.tgz(r-4.6-arm64)DAMOCLES_3.1.tgz(r-4.5-x86_64)DAMOCLES_3.1.tgz(r-4.5-arm64)
DAMOCLES_3.1.tar.gz(r-4.7-arm64)DAMOCLES_3.1.tar.gz(r-4.7-x86_64)DAMOCLES_3.1.tar.gz(r-4.6-arm64)DAMOCLES_3.1.tar.gz(r-4.6-x86_64)
DAMOCLES_3.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
DAMOCLES/json (API)

# Install 'DAMOCLES' in R:
install.packages('DAMOCLES', repos = c('https://rsetienne.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rsetienne/damocles/issues

Pkgdown/docs site:https://rsetienne.github.io

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:
  • NWPrimates_data - Dated phylogenetic tree of the New World Primates in nexus format and presence-absence matrix for species in Manu

On CRAN:

Conda:

cpp

4.04 score 1 stars 11 scripts 219 downloads 39 mentions 5 exports 96 dependencies

Last updated from:c709c593b9. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK211
linux-devel-x86_64OK226
source / vignettesOK228
linux-release-arm64OK202
linux-release-x86_64OK212
macos-release-arm64OK151
macos-release-x86_64OK332
macos-oldrel-arm64OK139
macos-oldrel-x86_64OK477
windows-develOK196
windows-releaseOK229
windows-oldrelOK185
wasm-releaseOK150

Exports:DAMOCLES_bootstrapDAMOCLES_loglikDAMOCLES_MLDAMOCLES_simHERACLES_ImportanceSampling

Dependencies:apebackportsbase64encBHbslibcachemcapercheckmatecliclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11data.tableDDDDEoptimdeSolvedigestdoParallelevaluateexpmfarverfastmapfastmatchfontawesomeforeachforeignFormulafsgenericsggplot2gluegridExtragtablehighrHmischtmlTablehtmltoolshtmlwidgetsigraphisobanditeratorsjquerylibjsonliteknitrlabelinglatticelifecyclemagrittrmapsMASSMatrixmatrixStatsmemoisemgcvmimemnormtmvtnormnlmennetnumDerivoptimParallelpermutephangornphytoolspicantepkgconfigpsoquadprogR6rappdirsRColorBrewerRcppRcppEigenrlangrmarkdownrpartrstudioapiS7sassscalesscatterplot3dSparseMstringistringrsubplextinytexvctrsveganviridisLitewithrxfunyaml