Package: PBD 1.4

PBD: Protracted Birth-Death Model of Diversification

Conducts maximum likelihood analysis and simulation of the protracted birth-death model of diversification. See Etienne, R.S. & J. Rosindell 2012 <doi:10.1093/sysbio/syr091>; Lambert, A., H. Morlon & R.S. Etienne 2014, <doi:10.1007/s00285-014-0767-x>; Etienne, R.S., H. Morlon & A. Lambert 2014, <doi:10.1111/evo.12433>.

Authors:Rampal S. Etienne

PBD_1.4.tar.gz
PBD_1.4.zip(r-4.5)PBD_1.4.zip(r-4.4)PBD_1.4.zip(r-4.3)
PBD_1.4.tgz(r-4.4-any)PBD_1.4.tgz(r-4.3-any)
PBD_1.4.tar.gz(r-4.5-noble)PBD_1.4.tar.gz(r-4.4-noble)
PBD_1.4.tgz(r-4.4-emscripten)PBD_1.4.tgz(r-4.3-emscripten)
PBD.pdf |PBD.html✨
PBD/json (API)

# Install 'PBD' in R:
install.packages('PBD', repos = c('https://rsetienne.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.81 score 72 scripts 205 downloads 9 mentions 14 exports 45 dependencies

Last updated 8 years agofrom:0fb502e2a5. Checks:OK: 1 NOTE: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-winNOTEOct 26 2024
R-4.5-linuxNOTEOct 26 2024
R-4.4-winNOTEOct 26 2024
R-4.4-macNOTEOct 26 2024
R-4.3-winNOTEOct 26 2024
R-4.3-macNOTEOct 26 2024

Exports:pbd_bootstrappbd_brts_densitypbd_durspec_cumdensitypbd_durspec_densitypbd_durspec_meanpbd_durspec_modepbd_durspec_momentpbd_durspec_quantilepbd_durspec_varpbd_loglikpbd_LRpbd_MLpbd_simpbd_sim_cpp

Dependencies:ade4apeBHcliclusterGenerationcodacodetoolscombinatcpp11DDDDEoptimdeSolvedigestdoParallelexpmfastmatchforeachgenericsglueigraphiteratorslatticelifecyclemagrittrmapsMASSMatrixmnormtnlmenumDerivoptimParallelphangornphytoolspixmappkgconfigquadprogRcppRcppArmadilloRcppEigenrlangscatterplot3dspSparseMsubplexvctrs

pbd_ML demo

Richel Bilderbeek & Rampal S. Etienne

Rendered fromPBD_ML_demo.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2017-04-29
Started: 2017-04-29